[PyMOL] Merging multiple ligands as separate pdb

Dear Pymol user, I have a protein and multiple ligand conformations as trajectories, i.e, i have loaded the protein using "cmd.load("protein.pdb", "input")" I have split the ligand into multiple states using the following command split_states ligand, prefix=sel now I have multiple objected created

Re: [PyMOL] Programmatically adding hydrogen and remove water to multiple PDB files

Hi Viswanath, Please find the attach file which might help you, You have to give the input folder path containing all the pdbs, for example in terminal input: "Please provide the input directory:/home/viswanath/pdb "and "Enter the required files extension .pdb:.pdb" as input, It will create a new f