[PyMOL] Problem using pymol

2015-12-08 Thread soumi
Respected Sir, Please let me know how can I renumber protein chains to avoid overlap and give it a uniqu chain id. How can I change .pse file to .pdb file? With regards, Soumi Das-- Go from Idea to

[PyMOL] Problem with pymol

2015-12-10 Thread soumi
Respected Sir, Can I build a model using missing residues through Pymol ? If it is,Please tell me the way. With Regards, SoumiDas-- ___ PyMOL-users mailin

[PyMOL] Modeling protein-dna complex

2016-08-13 Thread soumi
Hi,    I carry on my research work on protein-dna complex system.I have one dna pdb and one protein-dna complex pdb.I want to make new protein-dna complex pdb taking  dna from single pdb and protein from protein-dna complex.Protein possess similar DNA-binding specificities.I superimpose two pdb

[PyMOL] Modeling Protein-DNA complex

2016-08-16 Thread soumi
Hi,   I docked dna with homeodomain protein formed from modeller and  get docked protein-dna complex.I want to incorporate water molecules within homeodomain protein-dna complex which we observe in RCSB PDB file.Can it be possible using Pymol?Thanks,Soumi