Hi,
I have a naïve question here. Is there any command line equivalent to using
the menu color the by spectrum (rainbows and etc)?
Thanks!
-shuhsien
Hi,
I am new to Pymol with some experiences with Python.
I have a basic question which maybe a little stupid.
Does Pymal take Python commands in selecting atoms?
For instance:
i = range(1, 299)
select resi i
or, further:
for i in range(1, 299)
select resi i
I understand the above can be e
Hi,
This should be a trial question though I cannot find a way of doing it.
I have a simple script that looks like this:
(the original commands, rather than cmd.select..)
select ligand, resn XYZ
select protein, ! ligand
select box, protein within 8 of ligand
select box, box or byres box
save
Dear Dr.DeLano,
Thanks! That really helps!
Two more questions:
Does the 'pymol -qc' takes command line variables (os.argv in python)?
For example, the first line of my script would be:
cmd.do('load %s' %os.argv[1])
Second question might be off a little bit.
Is it possible to wrap PyMol as a mod
Thanks! And the util.rainbow works, too, but it produces different result
than the default spectrum.
However, there seems to be no PyMOL API for spectrum:
cmd.spectrum
So unfortunately I am unable to code that command in a python loop.
(or I am missing something again?)
-shuhsien
-Orig
Hi,
Our system administrator of a linux cluster have trouble upgrading from 0.93
to 0.95:
[mfitz...@man local]$ sudo rpm -U --test pymol-0.95-1.rh73.py22.i386.rpm
[mfitz...@man local]$ sudo rpm -U pymol-0.95-1.rh73.py22.i386.rpm
warning: user warren does not exist - using root
warning: user warre
