Re: [PyMOL] outline in ray trace mode 2 and 3

2010-08-11 Thread piuzzi
gt; Cheers, > > -- Jason > > > On Mon, Aug 9, 2010 at 12:41 PM, Marc Piuzzi wrote: >>  Hello everyone, >> >> I'm using PyMOL on 3 different os : Linux, Mac and Windows. I'm >> experiencing a weird issue with the last two : when I ray trace images,

[PyMOL] Smoothing camera movements

2011-02-15 Thread piuzzi
Hello everyone, I'm writing a script that interactively modifies the position of the camera with the commands cmd.turn and cmd.move. With these two commands, there is no transition from one position to another and that produce sluggish movements. Is there a way to animate the moves without

Re: [PyMOL] Smoothing camera movements

2011-02-15 Thread piuzzi
Hi Jason, Problem is, I'm trying to program an other head-tracking script for PyMol. The PyMol script receives the coordinates from OpenCV and changes the camera orientation accordingly in a loop so it is not possible to use scenes. The only solution I have found so far is to decompose the

Re: [PyMOL] Help: Linux active Stereo on screen seems OK with flickering in pymol window, but glasses dont seem to be shuttering

2011-07-21 Thread Marc Piuzzi
Hello Hari, I had some flickering problems when I first tried the stereo mode on an Alienware LCD display. There is one option in the Nvidia driver that seems to keep the display at 60Hz, it is called "Force Full GPU Scaling". Make sure that the option is turned off, otherwise you won't be able

[PyMOL] Transparency error on Mac with 1.5 svn source

2012-05-18 Thread Marc Piuzzi
sue with the MacPorts version. Any idea ? Thanks, Marc Piuzzi -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can

[PyMOL] outline in ray trace mode 2 and 3

2010-08-09 Thread Marc Piuzzi
Hello everyone, I'm using PyMOL on 3 different os : Linux, Mac and Windows. I'm experiencing a weird issue with the last two : when I ray trace images, the outline of ray_trace_mode 2 and 3 is white instead of being black (whatever the background color). I'm using PyMOL 1.3 for Mac (from Mac

[PyMOL] Outline in Ray trace mode 1

2010-09-30 Thread Marc Piuzzi
Hello everyone, I have a comment concerning Ray trace mode 1. I wanted to display a protein DNA complex with only the protein outlined and to do that the only way I found was to change the cartoon transparency of the DNA to 0.1. The problem is that the outline completely overrides the transpare