[PyMOL] Structure allignmnet in Pymol

Dear All, I am a new user in PyMoL and I have a question regarding the structure alignment in PyMOL. I have a protein that its crystal structure is not known. So I used "Modeller" software to predict the structure of its closet hit. ( I can easily visualize the structure of the closet hit in PyMOL)

[PyMOL] Calculating binding energy of ligand with protein

Hi PyMOL user, Is this possible to calculate the binding energy of ligand with protein using Pymol? If yes can you refer me some sources how I can do this task? Thank you Maryam ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-user

[PyMOL] Optimize the bond distance of ligand with protein

Dear Pymol user, I am trying to do molecular docking using Autodock vina. But when I insert the ligand and the protein, the distance of ligand is very far from protein (~7 angstrom) Is there any way to decrease the distance in pymol before doing the docking? Thank you Maryam ___

[PyMOL] How to make a dimer from a monomer

Hi PyMol users, Can you give me the tutorial on how to make a dimer from a monomer based on a template protein I have? Thank you Maryam ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: http