[PyMOL] morphing between complexes

Hi all, I'm new to this list and I'm a newbie of Pymol. I'm trying to do some morphing movies between different complexes (same protein but different ligands). I'm having troubles cause the morphed structures (pdbs generated by lsqman (procedure taken by this page http://ginsberg.med.virginia.edu/~

Re: [PyMOL] morphing between complexes

Il giorno mar, 28/11/2006 alle 11.22 -0500, matthew.frank...@imclone.com ha scritto: > > Dear Andrea - > > You should try using the Gerstein Morph Server: > http://www.molmovdb.org/molmovdb/morph/ > > The core algorithm uses CNS, so if your structure is parsed properly by > CNS, it should emerg

[PyMOL] 1letter code by default

Hi all, a very basic question: is possible to set the 1letter code by default in pymol? Thanks in advance Andrea -- Andrea Carotti Dipartimento di Chimica e Tecnologia del Farmaco Via del Liceo, 1 06123 Perugia, Italy phone: +39 075 585 5169 fax: +39 075 585 5161

[PyMOL] mesure line width

Hi all, is there the possibility to change the line width of the distance measure between two atoms? Thanks Andrea -- Andrea Carotti Dipartimento di Chimica e Tecnologia del Farmaco Via del Liceo, 1 06123 Perugia, Italy phone: +39 075 585 5169 fax: +39 075 585 5161

[PyMOL] Export trajectory

Hi all, is there the possibility to export a trajectory loaded in pymol? I've compiled it from source with the VMD support. With save molecule I can see only pdb...so probably it can create a multiple pdb file..but nothing else (e.g dcd...)? Thanks Andrea -- A

[PyMOL] Selecting a molecule by command line

d to do it? Something like "select sele, molecule 1"...? Thanks Andrea -- ¯¯¯¯¯¯¯¯ Andrea Carotti Dipartimento di Chimica e Tecnologia del Farmaco Università di Perugia Via del Liceo, 1 06123 Perugia, Italy phone: +39 075 585 5169 fax: +39 075 585 5161 www http://rpg.u