Re: [PyMOL] final fine adjustments

2002-12-18 Thread andre ambrosio
hi cheom, you scan try "turn x, 5". ok? andre ambrosio MSc student CBME/IFSC/USP - Brazil cheom-gil cheong wrote: > Dear all : > > I want to make final finest adjustments of the molecule in PyMol. > Adjusting orientation by mouse is too coarse for the final finest &

Re: [PyMOL] knobs on spheres

2003-04-10 Thread andRe ambrosio
hi, after generating spheres, try > hide nonbonded ok? andre ambrosio cbme/ifsc/usp - brazil Reiko Kagawa wrote: Hi everybody, When I ray-trace my ball-and-stick models, some knobs suddenly appear on a sphere that is sitting alone, not bonded to anything in the figure, hence turn

Re: [PyMOL] Transparent cartoons?

2003-09-17 Thread andRe ambrosio
e (the one that has cartoons); 2 - using selection tool, select the whole cartoon part, cut and paste in the first picture (creating a new layer) adjusting its position; 3 - now you can play with the transparency of the layer; 4 - flat the layers and save your picture. hope it helps. best regar

[PyMOL] PDB to DXF

2004-09-16 Thread andRe ambrosio
Hi, Is it possible to convert a .pdb in a .dxf (AUTOCAD) file? Does anyone know how? Thanks in advance, andre ambrosio PhD student cbme/ifsc/usp - brazil