[PyMOL] Trajectory Movie

2010-07-18 Thread YunHui Lisa Lin
Hello PyMOLers, I'm trying to make a movie showing the conformational changes of a protein. I'd like to use the "super" command to align conformations in between adjacent frames. So far I've written a script that loads one conformation at a time, performs the alignment, disables all other confo

[PyMOL] Rigimol specify number of frames

2010-08-03 Thread YunHui Lisa Lin
Hi PyMOLers, I'd like to control the number of intermediate frames that rigimol.morph() creates. How can I do this? Also, I can't seem to find any documentation about Rigimol- I've been relying on the few examples I've been able to find online. Does anyone know if documentation for Rigimol exi

[PyMOL] movie.produce() help

2010-08-11 Thread YunHui Lisa Lin
Hi PyMOLers, I'm using the "movie.produce()" command to automate the process of saving my movie in several fragments. After saving each part, I need to clear all existing objects in order to load the next set of frames. "movie.produce" successfully saves the first movie. However, any subsequent