[PyMOL] Getting angle between z axis and a molecules principal axis

2021-11-09 Thread Yogesh Sharma
Hi I want to get angle between a molecules principal axis and systems z axis iteratively over 100ns trajectory. I am new to pymol. Can someone help me with scripting it out? Thank you for your time. ___ PyMOL-users mailing list Archives: http://www.mail-a

[PyMOL] plotting atoms around aromatic side chain

2022-12-05 Thread Yogesh Sharma
hi all, I am trying to graph the diversity of amino acids on both planes of the aromatic side chain of tryptophan, but not getting any hint of where to start. Is there any way to map 3D coordinates on a 2d plot? Please suggest. * with regards* *Yogesh Sharma