; CRT monitor
The CRT monitor is set at 1344 x 1008 resolution and 120 Hz refresh
rate.
I hope this is useful information to those considering mac.
Wataru Kagawa
#####
Wataru Kagawa, Ph. D.
Postdoctoral Researcher
Protein Research Group
RIKEN (Physica
Dear PyMOL users:
I recently used the APBS plugin (v1.3) to display the surface potential of a
protein. I noticed that the charged surfaces were much more lightly colored,
compared with the surface colors I have calculated in the past (maybe a year
ago?) on the same protein, using the same soft
gt;
> Cheers,
> -Michael
>
> Hope I did not muddle the water too much
>
> Carsten
>
>> -Original Message-
>> From: Wataru Kagawa [mailto:wkag...@aoni.waseda.jp]
>> Sent: Monday, February 21, 2011 10:04 PM
>> To: pymol-users@lists.sourceforge
ugin do indeed use PDB2PQR. It's worth noting
> that the current version of the plugin allows you to specify command line
> arguments to PDB2PQR (e.g. --ff=AMBER, etc. if you're interested in trying
> out different force fields).
>
> Cheers,
>
> -Michael
>
&g
ng in pymol?
> Setting gamma to 4.0 from 1.0 and raytracing reproduces the washed out
> effect.
>
>
>> -----Original Message-
>> From: Wataru Kagawa [mailto:wkag...@aoni.waseda.jp]
>> Sent: Tuesday, February 22, 2011 7:19 PM
>> To: Michael Lerner
>>
quot;, line 18, in ?
from AbstractApp import AbstractApp
File "/sw/lib/pymol/modules/pmg_tk/AbstractApp.py", line 16, in ?
import Pmw
ImportError: No module named Pmw
Wataru Kagawa, Ph. D.
Special Postdoctoral Researcher
Protein Structure and Function Research Group
RIKEN
], [0,0,1] ]
It works very nicely.
Is there an easy way to hide the spectra? I'd like to zoom into the
molecule as much as possible before saving the image.
Wataru Kagawa, Ph. D.
Special Postdoctoral Researcher
Protein Structure and Function Research Group
RIKEN (Physical and Chemical Res
smaller molecules (e.g. 200 residues). Is there a parameter I have to
set before aligning large molecules in these versions? By the way, the
alignment worked fine in the fink version (0.93) of PyMOL.
I appreciate any help.
Wataru Kagawa, Ph. D.
Postdoctoral Researcher
Protein Research Group
tedly quit' error. Changing the name of the PyMOL executables
of the recent versions also gave the same error. Could the problem be
related to the recent os update (from 10.3.4 to 10.3.5) ?
Wataru Kagawa, Ph. D.
Postdoctoral Researcher
Protein Research Group
RIKEN (Physical and Chemica
