[PyMOL] Error occurs as mess after making the imidazol ring of His.

Dear pymol users I have been trying to build imidazol ring to one incomplete His of my pdb file by using builder in pymol. After finishing this ring I saved and opened once again by pymol. I have seen some thing like mess formation with in the residues. I request you to tell me what could be the r

[PyMOL] How to build imedazole by using builder

Dear pymol users I have been trying to build imidazol ring to one incomplete His of my pdb file by using builder in pymol. After finishing this ring I saved and opened once again by pymol. I have seen some thing like mess formation with in the residues. I request you to tell me what could be the r

[PyMOL] Ball and stick model

Dear Pymol Users I would like to represent the protein what I have in ball and stick model. I have done it by executing the command lines as following hide all show spheres show sticks set sphere_scale, 0.3 set stick_radius, 0.1 My question is can I do it by any other method? Means from pymol int

[PyMOL] Is it possible to find pi-pi interactions and cation-pi interactions of a PDB?

Dear Users, I have one pdb file and would like to find the pi-pi interactions and cation-pi interactions in it. Is it possible to find by pymol. If it does by pymol, kindly tell me how to do it. thanks in advance Surya Graduate student India. -

[PyMOL] How to find Vander Waals interactions for a particular residue?

Dear pymol users, I would like to calculate vander waals interaction of a patricular residue in a pdb. kindly tell me how to do it? Thanks in advance Surya Graduate student India. -- __