[PyMOL] incorporating rTools --how?

2003-06-24 Thread RichGB
I'd like to experiment with the rTools 0.5.2 package with PyMol0.88 (MacOSX 10.2.6 using the PyMol binary from the sourceforge site). But the installation 'hints' don't appear to describe a functional method of getting rTools to work with PyMol on this platform. Does anyone have this working

[PyMOL] element colouring schemes

2003-07-02 Thread RichGB
How can I add a new scheme to the list of element schemes under the "rainbow" button? I see what appears to be scheme definitions in util.py but I don't see where the colours, e.g. "nitrogen" are defined. If I create a small definition similar to what is in util.py where do I place it to get it loa

[PyMOL] running from unix command line

2003-12-07 Thread RichGB
I have a small script (in a file called sc1) that looks like this: load molecule.pdb,mol @colors set transparency, 0 set fog, 0 set ray_trace_fog, 0 set orthoscopic, 1 select * hide all show sticks origin name C17 png file.png and I'd like to run this from the unix command line, how do I do that?