[PyMOL] Visualizing protein-ligand complexes of metalloproteins

Prija Ponnan Research Student Department of Chemistry University of Delhi Delhi-110007, India & Canadian Commonwealth Scholarship Program Scholar College of Pharmacy and Nutrition University of Saskatchewan Saskatoon,SKN5C9,Ca

[PyMOL] namd-l: Invitation to Submit Review Article Current Protein & Peptide Science (IF: 2.326)

Impact Factor: 2.326). *Guest edited by Prof. Diwan S. Rawat, Dr. Prija Ponnan *, this thematic issue will publish review articles with emphasis on the frontiers of peptide chemistry and biology covering contemporary and emerging applications of peptide science involving topics such as *de novo* d

[PyMOL] Determining van der waals radius of a molecule

Hello I want to determine van der waals radius of a coumarin molecule. Pymol has an option to calculate van der waals radius, but it calculate vdw radius of individual atoms. Is it possible to determine vdw radius of the molecule as a whole. Thank you -- Prija Ponnan

Re: [PyMOL] Determining van der waals radius of a molecule

atom. Can anyone suggest me how i could determine vdw radius using any software. Thank you On Wed, Jun 23, 2010 at 2:58 PM, Prija Ponnan wrote: > Hello > > I want to determine van der waals radius of a coumarin molecule. > Pymol has an option to calculate van der waals radius, but

[PyMOL] Visualizing solvant accessible sur face area and calculating electrostatic potential of proteins

Hello I want to calculate electrostatic potential and solvant accessible area of protein. How can I do the above mentioned calculations using Pymol. Please guide me using tutorials. Thank you -- Prija Ponnan -- This

[PyMOL] Calculating % secondary structure

Hello Can we calculate percentage secondary structural element using Pymol or please suggest me some other program for this purpose Prija -- Prija Ponnan -- This SF.net email is sponsored by Sprint What will you do