Hi all,
I'm a beginner at PyMol, but I'm wondering if a batch action like this
would be possible: If I have a bunch of .sdf and .pdb files in a folder,
and I want to apply a specific "look" to all of them (I've written the
parameters regarding light, field of view etc.), is it possible to batch
pr
ort pymol
> from pymol import cmd
> pymol.finish_launching()
> import glob
>
> pdb_files = glob.glob('*.pdb')
> for pdb in pdb_files:
> cmd.load(pdb)
> ### insert your code here ###
> cmd.png('%s' % pdb.split('.')[0])
> cmd.
> <http://stackoverflow.com/questions/9493086/python-how-do-you-run-a-py-file>.
> Sorry about not explaining this before. The version I am sending you know
> should work with any of the 3 running methods.
>
> Cheers,
>
> Osvaldo.
>
> On Mon, Jun 8, 2015 at 7:27 AM,
Jun 8, 2015 at 3:08 PM, Osvaldo Martin
wrote:
> Glad is working!
> Since the script is a Python script (not a PyMOL script) you should be
> using the PyMOL API syntax. For example:
>
>- “set light_count,8” becomes cmd.set(“light_count”, “8”)
> - “load filename” becomes c
Dear all,
I am wondering if it's possible to vary the transparency of the line
representation in PyMol.
Currently I display the protein as a cartoon, then duplicate the object and
display it as a line (preset: technical, to be specific), but I want the
line representation to be less visible. Of c
