[PyMOL] Colorbyrmsd

Hi all I run the colorbyrmsd.py script for my PDBs. Since they are highly similar only a few regions were colord red as compared to the rest blue molecule. But I just wanted to ask can I get the RMSD scale for the colorbyrmsd script as I may want to change the scale and recolor the PBDs. Thanx in

[PyMOL] Aligning multiple residue sets in two or more proteins

Dear all I need to align lets say resi 80-120 and 160-220 from one protein to resi 80-120 and 160-220 in second protein. How can i do this. I tried following: align PDB1 and resi 80-120, PDB2 and resi 80-120 this is for one set but how to do for two sets 80-120 as well as 160-220 simultaneously. Th

Re: [PyMOL] Aligning multiple residue sets in two or more proteins

20/CA, PDB2//A/80-120+160-220/CA > > Cheers, > -Rajintha > > On Wed, Jul 2, 2014 at 7:22 AM, Monica Mittal > wrote: > >> Dear all >> I need to align lets say resi 80-120 and 160-220 from one protein to resi >> 80-120 and 160-220 in second protein. How can i

[PyMOL] APBS_problem

Hi all I installed APBS in PymoL folder and set APBS Location as follows: *APBS binary location* : C:\Program Files\DeLano Scientific\PyMOL\apbs-1.1.0\bin\apbs.exe *APBS psize.py location *: C:\Program Files\DeLano Scientific\PyMOL\apbs-1.1.0\share\tools\manip\psize.py But when i go for Set grid

[PyMOL] Phosphoserine

Hi, Does any one know if there is a simple way to mutate a serine to a phosphoserine using pymol? Or what would be the best way to achieve this? Thanks Monica -- Dive into the World of Parallel Programming. The Go Parall