Re: [PyMOL] PyMOL-users Digest, Vol 20, Issue 6

Hi Toni, I think the variable you want to set is "cartoon_transparency" not "transparency". The way I figured this out was through the menu->settings->Edit All... dialog box. Matt > Date: Tue, 22 Jan 2008 10:10:58 +0100 > From: " Toni Piz? " > Subject: [PyMOL] Transparency in cartoons > To:

[PyMOL] access to tkinter root for new Toplevel?

Hi All, I would like to write a Wizard that spawns a separate window. Right now I'm just calling Tkinter.Toplevel() with no arguments but it dies with non-deterministic tkinter errors. I think the issue is I need to pass the Tkinter.Tk() instance into the Toplevel command. 1) Is there a way I c

Re: [PyMOL] access to tkinter root for new Toplevel?

o Scientific LLC > Subscriber Support Services > mailto:del...@delsci.info > > > ---------- > *From:* pymol-users-boun...@lists.sourceforge.net [mailto: > pymol-users-boun...@lists.sourceforge.net] *On Behalf Of *Matthew O'Meara > *Sent:* Friday, April 25, 2008 12:

[PyMOL] how to get version?

Hi All, Is there a simple way to test which version of pymol is begin used in a script? Specifically I would like to know if it is <1.0 or >=1.0 Thanks, Matt

[PyMOL] uninstall plugin?

Hi all, May I request that an "Uninstall Plugin..." feature be added to the Plugin menu? It would just scan the pmg_tk/startup folder and throw up a box of what it finds and users can select some of them with check boxes and then it'd go and delete the file (and its .pyc friend) assuming the user

[PyMOL] python library versions for pymol binary distributions

Hi I'm making a Plugin that uses SWIG python bindings. I would like to distribute it in such a way that people who use pre-compiled versions of PyMOL will be able to use it. However, the python.h and python libraries PyMOL was compiled with and the python.h and python libraries that the bindings

[PyMOL] uninstall plugins?

Hi can there be in the next release an Uninstall Plugin command from the plugin-menu? Thanks, Matt

[PyMOL] plugins for MacPyMOL?

Hi, We have created a wizard that we would like to distribute, however a fair number of our users will be using the MacPyMOL version. It seems that the Plugin menu has been disabled as well as running scripts from the "file->run..." menu. Also plugin scripts dropped by hand into the modules/pmg_t

[PyMOL] get color function?

Hi Is there a way I can get the color of a given atom? eg if I do cmd.color( color, sele ) is there a function like gotten_color = cmd.get_color_of_selection( sele ) so that something like assert( gotten_color == color ) or atleast a function to get the color a given atom? Many

Re: [PyMOL] get color function?

rate sele, print color", followed by "print > cmd.get_color_index( idx )". This gives you the rgb tuple for the color > on 0-1 scale. > > I'd be curious to know if there's a way to avoid the iterate step, or > get the color name (instead of index or rgb valu

[PyMOL] unable to select

Hi, In a wizard I am working on when I open the sequence viewer I cannot make selections by clicking on the residues, other means of making selections such as clicking directly on the residue and using 'sele' from the command line work. Unfortunately I cannot give a simple test case because I have