[PyMOL] PyMOL on iPad

2012-08-20 Thread Mark Saper
Does anyone know if it is possible to display the residue number of a selected residue with iPad version? _ Mark A. Saper, Ph.D. Associate Professor of Biological Chemistry, University of Michigan Ann Arbor MI 48109-1055 U.S.A. sa...@umi

[PyMOL] Weird behavior of MacPyMOL

2012-08-29 Thread Mark Saper
Jason et al., I've noticed some strange behavior launching MacPyMOL. I'm running v 1.5.0.4 on OSX 10.8.1, but I don't think the version or OS is at fault. I discovered this problem when opening a session (.pse) file in a folder whose name is "pMM12(His6-EcLpoA(28-678)" (without quotes). Note

[PyMOL] Mojave support

2018-09-28 Thread Mark Saper
Hi Tom, Will PyMOL be supporting macOS Mojave (10.14) anytime soon? 10.14 is still supposed to support OpenGL but it is deprecated. Thanks, Mark ___ Mark A. Saper, Ph.D. Associate Professor of Biological Chemistry, U-M Medical School Room 3220B, MSRB

Re: [PyMOL] Mojave support

2018-09-28 Thread Mark Saper
ett Johnson > wrote: > > Hi Mark, > > I hope everything is still going well! According to initial tests we ran on > MacOS 10.14, PyMOL seems to run well. If you or any other users do come > across any issues, please let us know. > > Thanks, > > Jarrett J. > &

[PyMOL] Space group Symmetry operators

2019-05-01 Thread Mark Saper
PyMOL uses some preprogrammed space group operators to generate symmetry-related molecules. These molecules are numbered _010, _020, _030. I need to know which operators these correspond to for space group 18, P21212. Does anyone know where this can be found? There are different

Re: [PyMOL] Opening a .pse file causes GUI corruption.

2022-02-09 Thread Mark Saper
Followup to original posting. The problem I described is when running on the MacBook Pro display. If I connect an external monitor, and open the .pse file by double-clicking, the GUI is not affected. Thanks, Mark ___ PyMOL-users mailing list Archi

[PyMOL] Opening a .pse file causes GUI corruption.

2022-02-09 Thread Mark Saper
Dear Developers, I am running Pymol 2.5.2 on MacOS X 12.2 and have noticed a problem that never existed with 10.14. I save a .pse file from a recent session. If I open the .pse by double-clicking it, then PyMOL opens, shows the model, but the GUI (right menu), and scene labels (bottom left) h

Re: [PyMOL] Opening a .pse file causes GUI corruption.

2022-02-09 Thread Mark Saper
t; On Feb 9, 2022, at 1:09 PM, Mark Saper wrote: > > Followup to original posting. > > The problem I described is when running on the MacBook Pro display. If I > connect an external monitor, and open the .pse file by double-clicking, the > GUI i

[PyMOL] Problem launching PyMOL from macOS 13.7.1

2024-12-12 Thread Mark Saper
I am running the latest PyMOL 3.1.3 on macOS 13.7,1. When I double click a .pse or .pdb file, PyMOL opens normally and displays the molecule of interest. If I think double click on another file, PyMOL opens a new window, the molecule displays, but now there is a seoncd state of the moleculeThe G