Douglas Kojetin asked the following question on February 9, 2005:
>For example, the molecular surface "numbers" default to
>-1, 0 and 1. If they are changed to -5, 0 and 5, the displayed surface
>looks "less charged" than that displayed with the default numbers.
>What do the numbers mean?
I'm no
On Tue, 2005-03-22 at 14:09 -0500, Qun Wan wrote:
> Hi, everyone:
> If I want to select every cystein residues in my molecules,
I think this works:
select cysteins, resn Cys
Kind Regards,
./ Kristoffer
Hi Grégori
> I tried to exclude the "load" commands from my script, to pre-load the
> structures, display them, be sure that no other windows were
> overlapping the PyMol display window (I even placed the PyMol window
> on another location on > my screen!), and it didn't change anything. I
> also
Hi Sarma,
> I can change the color of the surface to gray or a rainbow gradient
> using the options but can't find a way to specify the residues that need
> to be colored differently in a surface representation.
You most likely need to select the residues first. That will give you an
extra entr
Hi Jack,
> In all of the examples distributed with APBS, the pdie (solute dielectric)
The pdie must be the protein dielectric constant though the comment for
pdie in the pymol generated .in-file reads "# Solute dielectric" ...
that is probably a mistake. The APBS-plugin says Protein Dielectric.
T
Dear Serge,
I suggest you simply make a test.
> Indeed if you read the documentation of Python, you'll see that the
> python byte-code interpreter is not able to run multiple thread at any
> given time
I don't think the PyMOL raytracer is written in Python. Furtermore, when
I raytrace in PyMOL
Dear Sebastien.
> answer by just looking online. When I type commands which bring up
> text in the viewer window how do i return the molecular image.
Just press the key (escape). Be sure that the PyMOL viewer window
(the one with the molecule) is focussed/selected prior to pressing
escape (if no
