[PyMOL] Live Rigimol morphs and memory

Hi PyMOL'ers I have, over some time now, made several morphs using rigimol from the incentive version of PyMOL. It is a continuous process with a membrane protein, where we have been lucky to solve more and more functional stages. Our favourite way of representing the morphs to a scientific aud

[PyMOL] pseudoatom at state 1

Hi PyMOL'ers, I have a Rigimol morph where I put in labels though the `pseudoatom` command. My problem is when I put a label a state 1 it becomes global and is seen in all other states. The command I use look like this: pseudoatom E2label, color=white, label="[H2-3]E2 State", pos=[0, 42, 170],

Re: [PyMOL] pseudoatom at state 1

...@mb.au.dk On 2012-07-12 15:35, Thomas Holder wrote: > Hi Jesper, > > please try this: > > unset static_singletons > > Cheers, > Thomas > > On 07/12/2012 03:31 PM, Jesper Lykkegaard Karlsen wrote: >> Hi PyMOL'ers, >> >> I have a Rigimol morph whe

[PyMOL] Ray tracing max_threads

treads. I have even tried setting max_treads to 72, but PyMOL refuses to use any more than 32 threads. Why this limitation? and is the a way to overcome it? Thanks Jesper -- Jesper Lykkegaard Karlsen Scientific Computing Centre for Structural Biology Department of Molecular Biology and

Re: [PyMOL] Movie to Powerpoint

There some cool free tools out there in cyberspace, one of them is Slide Show Movie Maker by Joern Thiemann http://www.joern-thiemann.de/tools/SSMM/index.html Although it is not meant as a live movie maker but for slide shows, it just a matter of frames pr. second, right ;-) First you need to co

[PyMOL] wizard message

I am setting up a interactive pymol presentation morphing between various functional stages of a protein. Since this is going to be presented from pymol it-self, it would be nice to pipe some text in to the screen when showing the different functional stages. The 'wizard message' command can a

Re: [PyMOL] Rigimol/ipymol

Hi Joel, The trick is to have all the atoms through out the morph in every single pdb. Thus, pdb1 needs to have ligands from pdb2 and pdb3 and so forth. Move the non-bound ligands out of the binding site for every pdb. If you run Rigimol now you will see the ligands, in turn, bind to the bindi

Re: [PyMOL] 3D Stereo Problem

Hi Deepangi, > 1. OS: Windows 7 > > 2. Monitor:Samsung Syncmaster 2233RZ 22in 3D Gaming LCD > > 3. Card: EVGA GeForce 9800 GTX+ 512MB PCIe w/Dual Link DVI > > 4. Glasses: NVIDIA 3D Vision Glasses > Wrong graphics card: http://www.nvidia.com/object/quadro_pro_graphics_boards.html /Jesper ---

Re: [PyMOL] 3D Stereo Problem

Hi Marius Marius Retegan wrote: > No according to this > http://www.nvidia.com/object/3D_Vision_Requirements.html and an old > post from the list http://bit.ly/61Lwbn. I thought this question was about getting pymol to run in 3D on win7. Not get your directX games to run in 3D. Pymol run Open