[PyMOL] PyMOL split_states error on [PDB: 1hho]

2016-02-21 Thread Ioannis Michalopoulos
pt=3&bionumber=1 Instead PyMOL shows a weird tetramer. Is it a bug? This approach works fine on other cases eg 1SVC. Is there any other way to do it? Thank you in advance. Best Regards, Ioannis -- Dr Ioannis Michalopoulos Staff Research Scientist - Associate Professor Level Centre of

Re: [PyMOL] PyMOL split_states error on [PDB: 1hho]

2016-02-22 Thread Ioannis Michalopoulos
> >> structure and oxygen binding in Biochemistry education, the 1 HHO > >> structure > >> seems to be a bad biological structure to calculate incorrectly. I guess > >> an email to the PDB might be in order (if it is intentional, they could > >> at &g

Re: [PyMOL] PyMOL split_states error on [PDB: 1hho]

2016-02-22 Thread Ioannis Michalopoulos
ps://sf.net/p/pymol/bugs/ but > reporting a bug here on the pymol-users list is equally effective > > Cheers, > Thomas -- Dr Ioannis Michalopoulos Staff Research Scientist - Associate Professor Level Centre of Systems Biology Tel

[PyMOL] Cannot save movie as MPEG

2016-02-29 Thread Ioannis Michalopoulos
k you in advance. Best Regards, Dr Ioannis Michalopoulos -- Dr Ioannis Michalopoulos Staff Research Scientist - Associate Professor Level Centre of Systems Biology Tel: +30 210 6597 127 Fax: +30 210 6597 545 Email: imicha...@bioacademy.gr _ Bio

[PyMOL] Video in Ubuntu Linux

2016-07-08 Thread Ioannis Michalopoulos
produce a movie in pymol, I get the same error message. What have I done wrong? Thank you in advance. Best Regards, Ioannis -- Dr Ioannis Michalopoulos Staff Research Scientist - Associate Professor Level Centre of Systems Biology Tel: +30 210 6597 127 Fax: +30 210 6597 545 Email: imicha...@bioa

Re: [PyMOL] Video in Ubuntu Linux

2016-07-08 Thread Ioannis Michalopoulos
On Friday 08 of July 2016 11:10:08 Folmer Fredslund wrote: > Dear Ioannis, > > On 2016-07-08 09:04, Ioannis Michalopoulos wrote: > > Dear PyMOL users, > > > > I use Kubuntu 14.04. I compiled PyMOL, following some instructions on the > > web. This produced the d

Re: [PyMOL] Video in Ubuntu Linux

2016-07-08 Thread Ioannis Michalopoulos
only need mpeg_encode (and not APBS, PDB2PQR and mengine), right? Ioannis On Friday 08 of July 2016 09:16:40 David Hall wrote: > Do you have the python code from freemol.org ? > > -David > > > On Jul 8, 2016, at 7:02 AM, Ioannis Michalopoulos wrote: > >> On Frid

Re: [PyMOL] Video in Ubuntu Linux

2016-07-11 Thread Ioannis Michalopoulos
ld be included in the source code of pymol, in the following releases. Best Regards, Ioannis -- Dr Ioannis Michalopoulos Staff Research Scientist - Associate Professor Level Centre of Systems Biology Tel: +30 210 6597 127 Fax: +30 210 6597 545 Email: imicha...@bioacade

[PyMOL] Unofficial Windows PyMOL Binaries fails to run

2017-02-13 Thread Ioannis Michalopoulos
duced for 32-bit Windows which are still in use by some of my students. I want all students to run the same PyMOL version, regardless of their Windows system type. I would be indebted if you could point out to me what I do wrong. Thank you in advance. Yours Sincerely, Dr Ioannis Michalopoulos --

Re: [PyMOL] Unofficial Windows PyMOL Binaries fails to run

2017-02-14 Thread Ioannis Michalopoulos
ol/mailman/message/34893959/ Furthermore, PyMOL fails to open PluginManager (it throws error messages). Any idea? Best Regards, Ioannis On 14/02/2017 03:27 πμ, Christoph Gohlke wrote: > On 2/13/2017 4:42 PM, Ioannis Michalopoulos wrote: >> Dear all, >> >> I use Window