[PyMOL] red-blue, red-cyan stereo

Anyone have an idea about how to write a script to do red-blue or red- cyan stereo with pymol --- Evan R. Kantrowitz, Ph.D e van.kantrow...@bc.edu Boston College

[PyMOL] putty tube representation

I am making tube representations as a comparison between two structures. I have the rmsd in the b-factor field. 1) If I do a putty representation it works. How does the program decide on the width variation of the tube? 2) How can this be reset? I want to do this so when I compare two dif

[PyMOL] Pymol apbs problem

With a certain file 1za1 from pdb when I try to run apbs I get the errors below. Other files are OK. Any suggestions? error: 1 ValueError Exception in Tk callback Function: at 0x182892b0> (type: ) Args: () Traceback (innermost last): File "/Applications/MacPyMol/PyMOLX11Hybrid.app/pymo

[PyMOL] Trying to get rms and rms_cur to run

Hi Folks, I have two positions of one small molecule. I am trying to determine the RMSD between them without doing an align I read the molecules into pymol as m1 and m2. As seen below each has 23 atoms. When I do an rms it gives the error: No atoms selected, but if I do an align it