[PyMOL] MacPyMOL touch pad control

Hi PyMol users, How can be I friendly with PyMol using the touch pad (MacBook Pro). What are the touch pad controls. Chandan -- Chandan kumar Choudhury NCL, Pune INDIA -- Simplify data backup and recovery for your virtua

[PyMOL] commands history

Dear PyMOL users, I was just wandering to know that does PyMOL saves the history of the commands typed? If so, please let me know how can it be done. Chandan -- Chandan kumar Choudhury NCL, Pune INDIA -- November Webin

[PyMOL] rotate cell

Dear PyMOL users, I want to rotate/revolve the loaded structure. The cell parameter should also rotate. I am aware of rotate command. eg. rotate X, 90. But when I view the cell. The rotation does not happen here. My purpose is to generated a snapshot showing the boundaries. How can this be achei

Re: [PyMOL] rotate cell

the "move" command ( > http://pymolwiki.org/index.php/Move) which moves the camera around the > molecule, instead of the "rotate" command ( > http://pymolwiki.org/index.php/Rotate) which alters the coordinates of > the object you are looking at. > > Hope

[PyMOL] color each polymer chain differently

Dear PyMOL users, I build 100 chains of polymer in a box. Residue number is different for every chain. Chain 1 has residue no. 1, chain 2 has residue no. 2 and so on. I want to color each chain differently. So, I wrote a script which generates a pml file, and opening this pml file with PyMOL shoul

Re: [PyMOL] color each polymer chain differently

chains are of same color, as I donot have chain no after that. Some utility which can color by residue number would be very useful. Chandan > > > > On Mar 12, 2014, at 11:15 PM, Chandan Choudhury wrote: > > > > > Dear PyMOL users, > > > > I build 100 chains o

[PyMOL] help about mutation

I am querious to know on what mathematical basis does the software mutates the amino acids. -- Chandan kumar Choudhury NCL, Pune INDIA -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial.

[PyMOL] mutation

Hello all!! I am required to mutate one of the atom of a protein (pdb file) with some groups of atoms. Pymol features us to mutate a residu with another amino acid, but I cannot mutate an atom with some other group that are not amino acids. So, how can I do it. Please help. Also I want to know th

[PyMOL] Pymol in Linux

I have been using pymol for sometime in Linux System (Suse 11.2). I notice that in Linux everything works fine but when I need to change some atom, in the edit mode, GUI doesnot select the desired atom. But in Windows OS, this problem doesnt erupt. Can someone help me out, to efficiently use Pymol

[PyMOL] hide bonds

Hello all !! Is it possible to hide bonds in pymol. I want to visualize only the atoms' arrangement, not how is it connected. Chandan -- Chandan kumar Choudhury NCL, Pune INDIA -- Start uncovering the many advantages of v

[PyMOL] viewing axis

Dear PyMOL users, Is it possible to view the axes (x, y and z), of a pdb file using pymol? Chandan -- Chandan kumar Choudhury NCL, Pune INDIA -- Start uncovering the many advantages of virtual appliances and start using t

Re: [PyMOL] viewing axis

iki.org/index.php/Axes > > Try it! It might just be what you're looking for. > > > Andreas > > > > > On 30/09/2010 10:28, Chandan Choudhury wrote: > >> Dear PyMOL users, >> Is it possible to view the axes (x, y and z), of a pdb file using pymol?