Hi,
I'd like to iterate using a script in pymol but one of the commands I'd like to
use does not have an associated cmd.API.
For example, how do I run:
for obj in seleobjs:
cmd.enable(obj)
colorbyrmsd(obj, target) <--- This third line doesn't work since colorbyrmsd
does not have a cmd.colorby
ur script could say:
import colorbyrmsd as cbr
for obj in seleobjs:
cmd.enable(obj)
cbr.colorbyrmsd(obj,target)"
Thank you both for your help!
Best regards,
Zuben
From: Mooers, Blaine H.M. (HSC)
Sent: Saturday, October 31, 2020 5:59 PM
To: Brown, Zuben
Hi Neena,
It's stored everything as a single object. Check the display -> sequence and
you'll see what I mean.
None of your residues have a number. I assume Pymol needs discrete residues to
display a cartoon.
See an example line--
Yours:
HETATM1 N 0 -1.172 4.898 0.414
They are different types of maps.
2F67 -- X-ray map
7B5C -- EM map
7B5C is not a 2fofc map.
Best wishes,
Zuben
From: Criss Hartzell
Sent: Wednesday, October 27, 2021 2:51 PM
To: Pymol User list
Subject: [EXTERNAL] [PyMOL] basic trouble viewing electron density
