[PyMOL] How to draw clashes in pymol

2014-08-29 Thread Bondurant
Hello community, I would like to draw a figure similar to this one http://www.cell.com/cms/attachment/615980/4968633/gr1.jpg showing the clashes between a potential ligand and the protein. The only way i know how to do this in pymol is using the show_bumps plugin, but i don't really like the "red d

[PyMOL] Problem with pymol installation

2016-03-21 Thread Bondurant
Hi everybody, I recently restored my laptop to factory settings and I am trying now to install latest precompiled pymol version following the instructions from http://www.pymolwiki.org/index.php/Windows_Install. I have installed python 2.7.11 and put in a Pymol_installation folder pip 8.0.3, numpy

Re: [PyMOL] Problem with pymol installation

2016-03-21 Thread Bondurant
t; python-2.7.11.amd64.msi. > > If that does not help, please list the contents of %CD%: dir "%CD%"\*.whl > > Christoph > > > > On 3/21/2016 3:31 AM, Bondurant wrote: > > Hi everybody, > > I recently restored my laptop to factory settings and I am trying