[PyMOL] Secondary structure and surface

Greetings PyMolers: I have a couple of questions. I am working on some figures and have found, at least for my particular protein, the DSS in PyMol does a better job with secondary structure assignments than DSSP. I have checked the assignments against the map and model in O. Is there any

Re: [PyMOL] running APBS plugin on macG5

Michael: I followed the directions for installing from source and used Bill Scott's tweak (both links below). Everything seems to be running fine. I am a bit short of memory using my Al G4PB, but everything configured and complied with no problems. I have only used APBS with the Pymol plug

[PyMOL] non_bonded size

Is there a way to set the size of non-bonded spheres to two different sizes within the same residue? For example, I have a metal ion with a bound water and have both in the same residue but I want the metal ion to be bigger than the water. I have check the list archives and googled "PyMol non

Re: [PyMOL] non_bonded size

) then you can change the properties of each object individually set sphere_scale, 1.2, MG set sphere_scale, 0.8, WAT good luck, Scott On Sep 8, 2004, at 2:19 PM, Alex W. Smith wrote: Is there a way to set the size of non-bonded spheres to two different sizes within the same residue? For