[PyMOL] Map Oddities

I am experiencing a strange phenomenon when I open maps in Pymol. I have a Chimera session with a PDB file docked into a CCP4 map. If I display the unit cell in Chimera the density is centered in the unit cell. If I open the exact same map and PDB file in Pymol, the model and map are no l

[PyMOL] nVidia OpenGL Environment Variable

It occured to me that something I use daily with Pymol might not have been discussed on this list. If it has, or is documented elsewhere on the Pymol webpage, or Wiki, let me know, and disregard this e-mail. If you have a modern nVidia graphics card (GeForce or newer), and you are running i

Re: [PyMOL] I need a new graphics card

Hi Bill, I think you are out of luck. The first Apple stereo card, the nVidia Quadro FX 4500 only works with a G5 Mac or better. Albion

[PyMOL] Changing Fog Color

Is there any way in Pymol to change the color of the fog? I want dark fog on a white background. Thanks Albion

[PyMOL] RNA and Pseudo-atom Models

I am new to PyMol and spent the day getting use to the controls, learning the interface and reading the manual. Now, I have a few questions. Before that though I want to let everyone know why I want to use PyMol I want to make high resolution, smooth (high frame rate) playing movies of the Riboso

RE: [PyMOL] RNA and Pseudo-atom Models

On Thu, 28 Feb 2002, DeLano, Warren wrote: > Nice to hear from you Albion, glad to see you're finally getting a > chance to try the package. Yes, it looks to be my answer to movie making if I can get it to read my model files! > Great -- PyMOL should be up to the task provided that you've got a

[PyMOL] Mac OS X?

I dont see an OS X package on the sourceforge site, and the source tarball has a "Rules.make" that claims it was never sucessfully compiled on Mac OS X. Is OS X still a work in progress or did I miss something? Thanks Albion Albion E. Baucom http://www.cse.ucsc.edu/~baucom