Re: [PyMOL] Question about visualisation of the spheres objects on PNG image

2021-03-01 Thread Jeff Saxon
Thank you very much, Ali! Yes, actually, I suppose I have set up vdw radii using those commands, considering specific selections,e.g this is part of my pymol script that I am using in bash. $pymol -c -d " from pymol import cmd cmd.load('${storage}/${syst_name}/all_clusters.pdb') cmd.split_states('

Re: [PyMOL] [EXTERNAL] Re: Question about visualisation of the spheres objects on PNG image

2021-03-01 Thread Mooers, Blaine H.M. (HSC)
Hi Jeff, In the png file that you posted last week, the smaller spheres were a lot smaller. They reminded me of nb_spheres. Did you turn on the display of nb_spheres in your .pymolrc file? Best regards, Blaine From: Jeff Saxon [jmsstarli...@gmail.com] S

[PyMOL] Ribbon width per residue

2021-03-01 Thread achatz
Hello, is it possible in Pymol to set the width of the ribbon representation per atom/residue like Chimera does with its ribscale command? Thanks Stefan ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.n

Re: [PyMOL] Ribbon width per residue

2021-03-01 Thread Ali Saad Kusay
Hi Stefan, As far as a I know cartoon width settings like "cartoon_oval_length" and "cartoon_oval_width" are object level settings meaning they cannot be implemented on a per residues basis (https://pymolwiki.org/index.php/Cartoon_Helix_Settings). You can use the putty mode which sets width ac

Re: [PyMOL] Question about visualisation of the spheres objects on PNG image

2021-03-01 Thread Ali Saad Kusay
Hi Jeff, That would be cmd.disable("object name") # https://pymolwiki.org/index.php/Disable Cheers, Ali On 1/3/21, 9:05 pm, "Jeff Saxon" wrote: Thank you very much, Ali! Yes, actually, I suppose I have set up vdw radii using those commands, considering specific selections,e.g