Re: [PyMOL] Formatted output

2020-10-26 Thread Thomas Holder
Hi Pedro, The Incentive PyMOL Qt GUI is able to handle a small subset of ANSI color codes. pymol.colorprinting.error("Text in red") pymol.colorprinting.warning("Text in magenta") print("\033[31mRed \033[32mGreen \033[33mYellow\033[m Default") https://en.wikipedia.org/wiki/ANSI_escape_code Open-

Re: [PyMOL] pref_get() on library mode

2020-10-26 Thread Thomas Holder
Hi Pedro, If you call `plugin_load` that will trigger initialization. pymol.plugins.plugin_load('yourplugin') value = pymol.plugins.pref_get('YOUPLUGIN_SOME_KEY') I feel like this plugin API is due for an overhaul, there are no great answers to your various questions :-/ Cheers, Thomas >

[PyMOL] Generating list of polar contacts

2020-10-26 Thread Marcelo Depólo
Hi, I have a set of protein structures and I want to quantify the amount of internal H-bond, salt-bridges and non-polar interactions in each of them. I was wondering if there is a way to use Pymol to provide a list of internal H-bond and salt-bridges. Maybe with polar contacts? Best regards, --

Re: [PyMOL] pref_get() on library mode

2020-10-26 Thread Pedro Lacerda
It worked like a charm, thank you. Em seg., 26 de out. de 2020 às 04:37, Thomas Holder < thomas.hol...@schrodinger.com> escreveu: > Hi Pedro, > > If you call `plugin_load` that will trigger initialization. > > pymol.plugins.plugin_load('yourplugin') > value = pymol.plugins.pref_get('YOUPLUGIN_SOM

Re: [PyMOL] pref_get() on library mode

2020-10-26 Thread Pedro Lacerda
Let me be honest. It worked like an old car. Qt wasn't loaded so an error message appears because my plugin uses Qt. The plugin initialization failed. Despite the message everything was ok and the preferences showed up. Em seg, 26 de out de 2020 13:21, Pedro Lacerda escreveu: > It worked like