[PyMOL] Question about python commands in PyMOL

Hello, I'm writing a python script that loads in PDBs then selects certain chains colors them according to a standardized chart. However, I've run into the issue where my when I try running my script in Pymol via the run command it just displays the text on the python script but doesn't actually e

Re: [PyMOL] [EXTERNAL] Question about python commands in PyMOL

Hi Hrutvik, After run script.py, enter 'load filenane' to run the function. Your function load() only prints the PyMOL commands that you want to execute. Add below or above the print lines, add these indented lines. cmd.do("load 1u8q.pdb") cmd.do("color red, (chain y)" ) You might consi

[PyMOL] Which 3D setup for a new installation? (Since 3D Vision is discontinued)

Dear List, one of our research groups needs a new 3D PyMol setup. Looking through the wiki (https://pymolwiki.org/index.php/Stereo_3D_Display_Options) the most prominent way to do 3D seemed through Nvidia's 3D Vision, but since 3D Vision is discontinued, i struggle a bit to find a good and fu

[PyMOL] Mutagenesis function not working

Hey list, I have an actin chain that I've attached linkers to (all the linkers are identical but have separate chain IDs), and I'm trying to perform mutagenesis on a specific part of each of the linkers, but whenever I try to do this, PyMOL only allows me to perform mutagenesis on the first lin