Hello there!
I am running a python script within pymol and I am trying to set
connect_mode to 1 by using:
cmd.set(connect_mode,1)
But pymol 1.8.4 does not recognize 'connect_mode' ("NameError: name
'connect_mode' is not defined")
All I want is to save my .pdb file with the CONNECT section. Is t
Ah I see. So that setting is for setting how bonds are interpreted when
opening a PDB, the setting you are looking for is pdb_connect_all. Again,
the setting needs to be sent in as a string, as with most things using the
PyMol API.
I made a simple script to make sure it works:
from pymol import c
