Re: [PyMOL] NameError: name 'util' is not defined

Hi Soren, Very interesting script, thanks for sharing! It looks like pymol2.PyMOL() doesn't work with the util module. It would need to wrap all util functions and pass the "_self" argument with every function call, just like pymol2.cmd2.Cmd does. It works for me if I use pymol2.SingletonPyMOL

Re: [PyMOL] NameError: name 'util' is not defined

Thanks for the quick answer Thomas! Yes, I will need multiple instances so I will work with the proxy then. Best, Soren On Tue, Feb 12, 2019 at 9:11 AM Thomas Holder wrote: > Hi Soren, > > Very interesting script, thanks for sharing! > > It looks like pymol2.PyMOL() doesn't work with the util

Re: [PyMOL] dark structure

Hi Sunting, Just need to turn off shaders -> ‘set use_shaders, off’. Do not know how to switch off the default on. Best, Cyprian From: sunting Sent: Monday, February 11, 2019 7:20 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] dark structure Hi, Is there any one

Re: [PyMOL] NameError: name 'util' is not defined

Hi Thomas, I tried the wrapper, but it seems it only works once when you change the color. If you try to change again I get this error: Selector-Error: Invalid selection name "BSA_mono". BSA_mono<-- BSA_mono being my loaded filename of course I can do other operations, but coloring does not

Re: [PyMOL] dark structure

Hi Cyprian and Sunting, Better solutions: - put "set precomputed_lighting" in your pymolrc - or just upgrade to PyMOL 2.3 (has precomputed_lighting on by default) See also: https://github.com/schrodinger/pymol-open-source/issues/15 https://sourceforge.net/p/pymol/mailman/message/36455017/ Cheer

Re: [PyMOL] dark structure

Hi Cyprian and Thomas, Problem solved! Thanks! Sunting Sent from Mail for Windows 10 From: Thomas Holder Sent: Tuesday, February 12, 2019 1:30 AM To: Cyprian Cukier Cc: sunting; pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] dark structure Hi Cyprian and Sunting, Better solutions:

Re: [PyMOL] PyMOL 2.3 released

Hi, Is this version supported under macOS 10.14.x (Mojave)? The supported OS listing just says 10.9+ but wanted to confirm. Thnx, -jack -Original Message- From: Thomas Holder Date: Monday, February 11, 2019 at 10:54 AM To: Pymol User list Subject: [PyMOL] PyMOL 2.3 released Gr

[PyMOL] 3d monitor recommendation?

Dear all, I used to use PyMol with a fast refreshing CRT and page flipping, but the monitor has died. What would you buy if you had $2,000 to replace it? Just a new monitor? Or any VR supported, maybe with an interface other than mice? Thanks! Bruce ___