[PyMOL] Change appearance of CGO Objects

2018-12-17 Thread Michel Rickhaus
Hi all I was wondering whether it is possible to change the appearance of a CGO Object after creation. I typically set the attributes of each CGO (plane for instance) using dict = {'ALPHA':1.0, 'COLOR':[0.99, 0.87, 0.67], 'INVERT':False} before the creating of the CGO and calling dict. Sometimes

Re: [PyMOL] Change appearance of CGO Objects

2018-12-17 Thread Thomas Holder
Hi Michel, Some operations should be compatible with the "color" command, in particular all BEGIN/END operations, as long as there is no COLOR operation. Only those which have the color as part of the operation arguments (like CYLINDER and TRIANGLE) won't be recolorable. Example: from pymol i

[PyMOL] Artificial Lines for Sticks

2018-12-17 Thread Michel Rickhaus
Hi all Did anyone else note that rendering sticks on high resolution with ray_trace_mode, 1 yields black lines down the middle of the sticks in some instances? I guess its where the cylinder meets up. Any idea how to prevent this? It's quite annoying to remove the manually in an image editor after

Re: [PyMOL] Artificial Lines for Sticks

2018-12-17 Thread Jarrett Johnson
Hi Michel, By chance can you attach an example image? Thanks, Jarrett J. On Mon, Dec 17, 2018 at 11:52 AM Michel Rickhaus wrote: > Hi all > > Did anyone else note that rendering sticks on high resolution with > ray_trace_mode, 1 yields black lines down the middle of the sticks in some > instan