Hi Yeping,
To avoid this ‘breaking’ of your protein you will first need to create a copy
of the entire molecule, set the transparency of the copy to your desired value,
then hide the residues you want to make transparent on your original object.
So, you will do something like this:
# create a
Hello, After optimizing the Iron-sulfur clusters existing in the photosystem
I, the coordinates transforms to another frame, what I need to do is to
transfer back to the original coordinates by getting the transformation matrix.
here what I did ..using pymola1- I loaded post and pre-processing
