Re: [PyMOL] allign multiple freme in pymol

Hi Abhik and Jared, There is also "intra_fit" and "multifilesave": https://pymolwiki.org/index.php/intra_fit https://pymolwiki.org/index.php/multifilesave Example: intra_fit name CA multifilesave model{state:06}.pdb, state=0 Cheers, Thomas > On Jul 30, 2018, at 9:46 PM, Jared Sampson wro

[PyMOL] check structures

Hello, I would like to know how to check for missing or broken part of a PDB file using pymol? should i screen within each amino acid or there is a way to show it by pymol? Thanks Mohammad -- Check out the vibrant tech co

[PyMOL] Serine phosphorylation

Hi all, I have a peptide structure and would like to phosphorylate one of the serine residues to test its binding capacity to a ligand. I tried the Build function with a PyMol 2.0, but only a phosphorous can be added to the serine. Does anyone have experiences of creating a phosphorylated residue

[PyMOL] 4th Call For Papers - 25th Annual Tcl/Tk Conference (Tcl'2018)

Hello pymol-users, fyi ... 25th Annual Tcl/Tk Conference (Tcl'2018) http://www.tcl.tk/community/tcl2018/ October 15 - 19, 2018 Crowne Plaza Houston River Oaks 2712 Southwest Freeway, 77098 Houston, Texas, USA Important Dates: [[ Attention! Counting down we are now bit a shy of 4 weeks to

Re: [PyMOL] check structures

Hi Mohammad, I do not know if PyMOL can do what you want. But... If you know how to refine using phenix*, and the pdb has electron density data, I suggest to refine and validate your structure. In the validation window, there is specific tab where one can see if the structure has missing atoms. If