[PyMOL] Energy minimization in PyMol

2018-07-22 Thread Vitaly Balan
Dear members of PyMol community, is there any way to perform energy minimization in PyMol after mutagenesis and choosing the rortomer? I didn’t find anything on PyMolwiki website. Thanks, Vitaly -- Check out the vibrant

[PyMOL] Steps to create a movie with objects and cameras moved independently of each other in PyMOL

2018-07-22 Thread Riccardo
Hello, PyMOL community, I have compiled open-source PyMOL v2.2.0a0 under Linux OS. Reading this webpage and seeing this video , I tried the "*copy to object / new*" command on selections, moving them indipenden

[PyMOL] Preventing Output of pair_fit

2018-07-22 Thread nclement
Hi, Consider the following (simplified) Pymol script, test.py: - import sys cmd.load(sys.argv[1], 'prot1') cmd.load(sys.argv[2], 'prot2') rms = cmd.pair_fit('prot1 & n. ca','prot2 & n. ca') print 'This should print', rms - I would like the only output for this program to be created by t