Hi Nathan,
I have some insights for this issue. Basically the long gaps between the
selected parts become too expensive in the alignment scoring. Changing e.g. the
gap extension penalty leads to the expected result:
# default is extend=-0.7, lowering to -0.6
super gold & contact_all, test, cycl
Hello,
I am trying to run pymol on my linux computer (Ubuntu 17.10).
I downloaded PyMOL-2.1.1_0-Linux-x86_64.tar.bz2
then unpacked with
tar -jxf PyMOL-2.1.1_0-Linux-x86_64.tar.bz2
When I try to execute pymol from the pymol folder, I get the following
message.
This application failed to start
Hi Mohammad,
This error typically indicates that the PyMOL installation interferes with a
different Qt installation on your system. I though we have this under control,
our launcher script unsets all (known) interfering environment variables.
Can you check which Qt environment variables are set
Hello,
I am very new to pymol and mainly use it for visualizing proteins and
surface properties. I am trying to generate the electrostatic potential map
of a Adeno associated viral particle which has 60 identical subunits. I
have the PDB file for it but it only shows 1 subunit at a time. In additi
Thank you for your reply Thomas. Please see below for the Qt and LD on my
system.
env | grep QT
QT_ACCESSIBILITY=1
QT4_IM_MODULE=xim
QT_IM_MODULE=ibus
IMOD_QTLIBDIR=/usr/local/IMOD/qtlib
env | grep LD
LD_LIBRARY_PATH=/usr/local/lib
Best,
M.
On Wed, Jul 4, 2018 at 7:20 PM, Thomas Holder wrote:
