[PyMOL] AutoDock plugin error

2018-06-13 Thread Enrique Ordaz
Dear everyone, I have recently installed the open-source Pymol 1.7.x on Ubuntu 16.04 sudo-apt-get install pymol I then added the Pymol-script-repo which includes the Autodock/Vina plugin and ADT. This has worked well for me in the past. However on this new installation I keep getting the foll

Re: [PyMOL] AutoDock plugin error

2018-06-13 Thread J.R. W
Enrique, I don’t know a lot about AutoDock, but I do know a lot about python. That error comes from using a new versions of numpy (1.14) that does not have old numeric with it anymore (deprecated in 1.9). You can do a few things. Run the script within pymol which uses a earlier release of n

Re: [PyMOL] AutoDock plugin error

2018-06-13 Thread Thomas Holder
Hi all, I made a pull request to Pymol-script-repo where oldnumeric is replaced with numpy in the bundled ADT copy. Anyone willing to review and test this? https://github.com/Pymol-Scripts/Pymol-script-repo/pull/98 Cheers, Thomas > On Jun 13, 2018, at 11:24 AM, J.R. W wrote: > > Enrique,