Re: [PyMOL] Can I easily specify an alignment to use in the sequence display?

2018-01-17 Thread Thomas Holder
Hi Tony, It's possible, but not out of the box. I wrote a script for this some time ago which uses biopython and emboss. If you're using Linux or MacOS, everything is prepackaged for you in Anaconda Cloud. For installation instructions and examples, see: https://pymolwiki.org/index.php/Load_aln

Re: [PyMOL] Can I easily specify an alignment to use in the sequence display?

2018-01-17 Thread Tony Lewis
Hi Thomas, In my use-case, I'd like to distribute .pml scripts to my PyMOL-using users, which display the alignment correctly out-of-the-box, without the users having to install anything. AFAIU, it doesn't sound as though I'd be able to do that with this solution. Please may I add 1 vote for supp