Re: [PyMOL] NME and ACE capping from script

2017-11-18 Thread Thomas Holder
Hi Simon, I think this is the code you're looking for: from pymol import cmd, editor cmd.set('retain_order', 0) cmd.fab('APAPAPAP') editor.attach_amino_acid("last name C", 'nme') editor.attach_amino_acid("first name N", 'ace') Hope that helps. Cheers, Thomas > On Nov 17, 2017, at 8:26 AM, Si

Re: [PyMOL] Pymol crashes

2017-11-18 Thread Thomas Holder
Hi Davinder, Usually such crashes are related to the graphics driver. Does PyMOL 2.0 also crash on your machine? https://pymol.org/2/#download Thomas > On Nov 14, 2017, at 11:44 PM, Dhalla, Davinder wrote: > > Hi, > > I am trying to launch Pymol version 1.8.7.0. on my CentOS 7 OS. > Everytim

Re: [PyMOL] NME and ACE capping from script

2017-11-18 Thread Simon Kit Sang Chu
Hi Thomas, Thanks for your help! But the NME and ACE are added unattached and randomly in the pdb. I simplified with a dipeptide AA instead. The file is attached here. Regards, Simon 2017-11-18 17:04 GMT+08:00 Thomas Holder : > Hi Simon, > > I think this is the code you're looking for: > > from

Re: [PyMOL] NME and ACE capping from script

2017-11-18 Thread Thomas Holder
Hi Simon, My example works for me in PyMOL version 1.8.0 and later. Which version do you use? Thomas > On Nov 18, 2017, at 3:59 PM, Simon Kit Sang Chu > wrote: > > Hi Thomas, > > Thanks for your help! But the NME and ACE are added unattached and randomly > in the pdb. I simplified with a d