Hello,
I'm using PyMOL 1.8.6.1 (64 bits) on a Linux distribution (CentOS 7). I
used PyMOL API for CE alignment (protein and ligand) with a reference
(target) protein. Then, I saved the aligned protein and ligand. Input
and output format are mol2. However, I noticed that atomic types from
arom
Hi Célien,
In my understanding, since every aromatic carbon is sp2 hybridized, PyMOL's
output is not wrong. The problem is that PyMOL only knows about delocalized
bonds, it doesn't have a proper concept of aromaticity (doesn't implement
Hückel's rule). For example you sometimes also see PyMOL's
Hi,
I am trying to launch Pymol version 1.8.7.0. on my CentOS 7 OS.
Everytime I try to launch it, it crashes with a message:
/usr/bin/pymol: line 3: 19995 Segmentation fault (core dumped)
"/usr/bin/python" "/usr/lib64/python2.7/site-packages/pymol/__init__.py"
"$@"
What should I do?
Regards
