[PyMOL] cmd.load_coords not returning anything

2017-08-29 Thread Gregor Hagelüken
Hi, I am using the cmd.load_coords function in my script, which does the following: 1-do some calculations with coordinates. Next, I want to use the new set of coordinates as input for another program, for which I only have an executable that reads .pdb files. So my approach is: 2-Use cmd.load_

[PyMOL] cmd.load_coords does not return

2017-08-29 Thread Gregor Hagelüken
Hi, I am using the cmd.load_coords function in my script, which does the following: 1-do some calculations with coordinates. I want to use the new coordinates as input for another program, for which I only have an executable that reads .pdb files. So my approach is: 2-Use load_coords to apply t

[PyMOL] select_aminoAcid_by_its_color_value

2017-08-29 Thread Karol K
Hi All, I have a protein, which is colored by rmsd. The .pml coloring scripts have been produced by ProSmart. The color spectrum is white, yellow and red, where red denotes the highest rmsd value. Does anyone knows how to select only these AAs, which are colored in red? thanks -