Hi,
Is there a way of extracting residue information from a session file in which a
few residues are shown in sticks representation?
I am interested in changing representation/adding labels to only those residues
with stick representation.
Thanks,
Abhinav
Abhinav Kumar, PhD
Senior Scientist, Da
Hi Abhinav,
You can select by representation, e.g.:
iterate rep sticks, print(chain, resi)
or directly add labels on CA atoms:
label byca rep sticks, resi
Hope that helps.
Cheers,
Thomas
On 22 Mar 2017, at 15:43, Kumar, Abhinav wrote:
> Hi,
> Is there a way of extracting residue informat
Hi Thomas,
Thanks very much. It works well.
However, can you please help me refine the print out?
I want to include the object name and print only once the residue info for each
residue. Currently it prints for all atoms of residues.
I tried the following:
iterate rep sticks, print(cmd.get_names(e
Hi Abhinav,
- Object name is the "model" variable. Check this page:
https://pymolwiki.org/index.php/Iterate#Exposed_Variables
- Limit selection to enabled objects: "enabled" selection keyword
- Limit selection to one atom per residue: "byca" will do the trick for proteins
iterate byca (rep stic
Perfect.
Thanks again Thomas.
Abhinav
-Original Message-
From: Thomas Holder [mailto:thomas.hol...@schrodinger.com]
Sent: Wednesday, March 22, 2017 2:05 PM
To: Kumar, Abhinav
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] selection of residues
Hi Abhinav,
- Object name is t
