I'm looking for a python script to sample from the entire pdb. I want to
select pdb's with a certain attribute, or rule out a certain attribute, for
example membrane proteins. I also want to rule out pdb's that have metal
atoms in them.
I would appreciate all of your help.
Sincerest regards.
Hi Thomas,
Thank you for your answer! Your solution works great!
It's very handy to directly set RGB colors using alter!
Thanks for your help!
Best,
Leonhard
On 28.02.2017 16:41, Thomas Holder wrote:
> Hi Leonhard,
>
> Very interesting analysis. I'm wondering if this slowdown actually scale
Hi,
I use a python script to copy an object, rotate it, alter its chain ID and then
merge it with the original object.
Here is the relevant part of my script:
angle = 360.0/monomers
chains = ["A", "B", "C", "D", "E", "F", "G", "H", "I",
"J", "K",
Hi Gregor,
Looks like retain_order is on for her. This should fix it:
PyMOL> set retain_order, off
https://pymolwiki.org/index.php/Retain_order
Cheers,
Thomas
On 01 Mar 2017, at 10:28, Gregor Hagelüken wrote:
> Hi,
>
> I use a python script to copy an object, rotate it, alter its chain ID
clearing the "rank" property also works for me, then the script should not
depend on retain_order anymore:
currentName = "%s_%s" % (solutionPymolString, currentChain)
cmd.alter(currentName, "chain='%s';rank=-1" % currentChain)
However, I think there is also a problem with your script, yo
