Thanks Jared.
First part, is perfect. So pseudo atom lies between nitrogen atoms.
Second part, I don't have specific xyz coordinates because it is centre of
a tunnel in the protein and that's the struggle.
On Thu, Jan 26, 2017 at 10:01 PM, Sampson, Jared M. <
jms2...@cumc.columbia.edu> wrote:
>
Is there a way to calculate COM for a tunnel?
On Thu, Jan 26, 2017 at 10:14 PM, Hitesh Patel
wrote:
> Hi,
>
> For your 2nd question:
> You can make pseudoatom at Center of mass or center of geometry (for an
> object or probably selection too) using the following script:
> https://pymolwiki.org/i
Hey Tsjerk!
So good to connect again here!
I will look up Mole plugin for possible channels, come back and write here
again and a script would of course be very nice to have.
Thanks for the help.
Kanika
On Thu, Jan 26, 2017 at 10:39 PM, Tsjerk Wassenaar
wrote:
> Hi Kanika,
>
> That's been qui
Dear pymol users,
I understand that pymol does not explicitly need connectivity data to visualise
molecules as bonds are drawn when two atoms are within in a given distance.
However, once those bonds are drawn for the molecule, is connectivity data
stored somewhere whilst the file is in use? I
