Hi Pymol user
I have a heterodimer protein and I wanted to compare it with homologous
structures. The chain B of both the structures can be align with align
command and in doing so, the chain A is misaligned and which can be only
align by the cealign command. The sequence similarity between chain A
Hi Jiri,
Try this on the PyMOL command line:
# example structures (use your own here)
fetch 1ake, s1, async=0
fetch 4ake, s2, async=0
# import the "angle_between_domains" command
run
https://raw.githubusercontent.com/speleo3/pymol-psico/master/psico/orientation.py
# align on chain A
align s1 &
