Re: [PyMOL] Pair_fit syntax

First off, when the documentation includes square brackets in the command it indicates optional arguments. You don't include them in the command itself. In this case, pair_fit takes alternating selections from obj1 and obj 2. It also requires that the number of atoms in each selection be equal. I u

Re: [PyMOL] Pair_fit syntax

Hi Spencer, Thanks a lot for that very useful information. Regards, Subha On Tue, Oct 25, 2016 at 4:48 AM, Spencer Bliven wrote: > First off, when the documentation includes square brackets in the command > it indicates optional arguments. You don't include them in the command > itself. In thi

[PyMOL] difficulty opening EmrE protein (pdb: 3B5D) in Pymol

Hi everyone, Can someone please assist me opening this pdb file? I am trying to open EmrE protein (pdb: 3B5D) in Pymol a and show it as cartoon representation, but it opens up as many little cross signs seem to be corresponding to CA atoms. When I try to preset it pretty or any other preset opt

Re: [PyMOL] difficulty opening EmrE protein (pdb: 3B5D) in Pymol

Hi Mohsen, The PDB file of 3B5D only contains CA atoms, so most rendering like cartoon fails. You could try to visualize it by "set ribbon_trace_atoms, 1" and then show it as ribbon. Yuxing -Original Message- From: pymol-users-requ...@lists.sourceforge.net [mailto:pymol-users-requ...@