Re: [PyMOL] Detecting holes/cavities in surface

2016-07-21 Thread Douglas Houston
Hi Daniel, If you don't HAVE to use Pymol, something like fPocket, HOLE or PocketDepth from this list might do what you want: http://www.vls3d.com/links/bioinformatics/binding-pockets You might find this list interesting too: http://www.vls3d.com/links/bioinformatics/peptides-antibodies-epito

Re: [PyMOL] Grammar for PyMOL selection algebra

2016-07-21 Thread Thomas Holder
Hi Lukas, All operators: https://sourceforge.net/p/pymol/code/4159/tree/trunk/pymol/layer3/Selector.cpp#l455 Operator types (e.g. number of arguments) and priority (order of operation): https://sourceforge.net/p/pymol/code/4159/tree/trunk/pymol/layer3/Selector.cpp#l365 Hope that helps. Cheers,

[PyMOL] PyMOL 1.8.2.3 bugfix release

2016-07-21 Thread Thomas Holder
Greetings, PyMOL 1.8.2.3 fixes an annoying picking bug, where picking atoms with the mouse can select the wrong atoms. If you use Incentive PyMOL 1.8.x, we recommend to upgrade. Builds are available as usual from http://pymol.org/download Cheers, - The PyMOL Team at Schrödinger -- Thomas Hold