Hi Daniel,
If you don't HAVE to use Pymol, something like fPocket, HOLE or
PocketDepth from this list might do what you want:
http://www.vls3d.com/links/bioinformatics/binding-pockets
You might find this list interesting too:
http://www.vls3d.com/links/bioinformatics/peptides-antibodies-epito
Hi Lukas,
All operators:
https://sourceforge.net/p/pymol/code/4159/tree/trunk/pymol/layer3/Selector.cpp#l455
Operator types (e.g. number of arguments) and priority (order of operation):
https://sourceforge.net/p/pymol/code/4159/tree/trunk/pymol/layer3/Selector.cpp#l365
Hope that helps.
Cheers,
Greetings,
PyMOL 1.8.2.3 fixes an annoying picking bug, where picking atoms with the mouse
can select the wrong atoms. If you use Incentive PyMOL 1.8.x, we recommend to
upgrade. Builds are available as usual from http://pymol.org/download
Cheers,
- The PyMOL Team at Schrödinger
--
Thomas Hold