[PyMOL] Grammar for PyMOL selection algebra

2016-07-19 Thread Lukáš Pravda
Dear PyMOL users, I am trying to add support for pymol-like selection algebra into one of your software tools. Therefore, I was wondering, if there is any formal description of the language available in for example as context-free grammar. I was trying to find something in the source code rath

[PyMOL] Detecting holes/cavities in surface

2016-07-19 Thread Daniel James
Hi all, I haven't used this list before but can't find an answer to my question elsewhere. I am selecting the antibody binding site automatically to calculate the surface area of the binding sites. However, some of the binding sites have holes/cavities in the surface - I would like to be able to

Re: [PyMOL] Detecting holes/cavities in surface

2016-07-19 Thread Andreas Warnecke
I haven't used it before, but I there is a PyMOL plugin called KVfinder that detects cavities. Potentially this offers an approach for you. On Jul 20, 2016 12:05 AM, "Daniel James" wrote: > Hi all, > > I haven't used this list before but can't find an answer to my question > elsewhere. I am selec