Dear Dr Tsjerk,
Thank you very much!.
For example, I have a structure of "protein.pdb". I tried but seems not work:
PyMOL>open("ss.dat","w").writelines(["Residue %d: %s\n"%(a.resi,a.ss) for a in
cmd.get_model("protein"+" and n. ca").atom])
Traceback (most recent call last):
File "D:\Program
Hi Zhang Chen,
Oh, I guess that the %d should be %s then. Sorry.
Cheers,
Tsjerk
On May 14, 2016 13:45, "ZHANG Cheng" <272699...@qq.com> wrote:
> Dear Dr Tsjerk,
> Thank you very much!.
>
> For example, I have a structure of "protein.pdb". I tried but seems not
> work:
>
> PyMOL>open("ss.dat","w
Dear Dr Tsjerk,
Thank you very much. Now it works!
There are only L, S, H
So,
L: loop
S: beta-strand
H: alpha-helix
Is that right?
Thank you.
Cheng
-- Original --
From: "Tsjerk Wassenaar";;
Date: Sat, May 14, 2016 07:49 PM
To: "ZHANG Cheng"<272699...
Hi Zhang Chen,
Yes, Pymol only recognizes Helix (3-,alpha,pi), Sheet and Loop (including
turns and such).
Best,
Tsjerk
On May 14, 2016 13:55, "ZHANG Cheng" <272699...@qq.com> wrote:
> Dear Dr Tsjerk,
> Thank you very much. Now it works!
>
> There are only L, S, H
>
> So,
> L: loop
> S: beta-str
Hi Tsjerk,
Thank you very much!
Yours sincerely
Cheng
-- Original --
From: "Tsjerk Wassenaar";;
Date: Sat, May 14, 2016 08:08 PM
To: "ZHANG Cheng"<272699...@qq.com>;
Cc: "pymol-users";
Subject: Re: [PyMOL] How to export secondary structure information
f
