[PyMOL] Ray tracing max_threads

2016-01-22 Thread Jesper Lykkegaard Karlsen
Hi, I am doing some heavy duty ray tracing in PyMOL. I realize spreading the job over multiple nodes in a PBS requires MPI integration in PyMOL, but this is run on a single machine with 36 physical CPU cores and 72 logical threads. Although, during PyMOL ray tracing CPU usage maxes-out at 32 tr

Re: [PyMOL] Displaying sticks on RNA bases only

2016-01-22 Thread Thomas Holder
Hi Maria, The following shows filled rings and sticks for the nucleosides: set cartoon_ring_finder, 1 set cartoon_ring_mode, 3 as cartoon To not show filled rings for the nucleobases, you can hide cartoon for the sidechain selection, and show sticks instead (the sidechain selection keyword was